Bioconductor Paired-end reads

Showing : paired-end reads • reset

votes

replies

1.2k

views

diffbind paired-end reads

updated 4.0 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by rbronste ▴ 60

votes

replies

1.7k

views

paired-end reads bam file

7.0 years ago ioannis.vardaxis ▴ 30

votes

1.4k

views

dnaseq rtracklayer paired-end reads

7.4 years ago zwfanwz678 • 0

vote

replies

1.3k

views

summarizeoverlaps paired-end reads readGAlignmentPairs

7.6 years ago teresati ▴ 10

votes

replies

1.1k

views

quasr quasr error paired-end reads rnaseq

7.9 years ago guillaume.dachy • 0

votes

replies

1.2k

views

quasr paired-end reads rnaseq

7.9 years ago guillaume.dachy • 0

votes

replies

1.1k

views

quasr rnaseq paired-end reads

7.9 years ago guillaume.dachy • 0

vote

replies

1.6k

views

rsamtools paired-end reads countbam

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Dario Strbenac ★ 1.5k

8 results • Page 1 of 1

Recent ...

Replies

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Awards • All